top of page

Intention-to-Treat vs. Per-Protocol: An In-Depth Exploration in Clinical Epidemiology

Writer: MaytaMayta

1. Introduction

Randomized controlled trials are designed to isolate the effect of an intervention by randomly assigning participants to intervention or control groups. This random assignment, when done correctly, balances both known and unknown confounders across groups. However, real-world factors such as non-adherence to treatment, dropouts, and loss to follow-up can complicate post-randomization analyses.

In clinical epidemiology, ITT and PP are two principal approaches to handle these complexities. Each has advantages and drawbacks that shape how we interpret trial outcomes in both research settings and practical clinical contexts.


 

2. Defining Key Concepts

2.1 Randomization and Confounding

  • Randomization: The process of assigning trial participants to treatment arms in a manner determined purely by chance. Randomization aims to evenly distribute both measured and unmeasured confounders across groups.

  • Confounding: Occurs when factors outside of the studied intervention can influence outcomes. Proper randomization is the most robust way to minimize confounding in clinical trials.

2.2 Protocol Deviations and Dropouts

  • Protocol Deviations: Any divergence from the planned study procedures—e.g., taking the wrong dose, missing scheduled visits, or switching treatments.

  • Dropouts or Attrition: Participants who do not complete the study for any reason (lost to follow-up, adverse events, personal preference, etc.).

These deviations can threaten the integrity of randomized allocation by potentially introducing new biases post-randomization. Different analytical approaches handle such deviations with varying philosophies.


 

3. Intention-to-Treat (ITT) Analysis

3.1 What Is ITT?

Intention-to-treat analysis includes every participant in the group to which they were randomized, regardless of their adherence, withdrawals, or deviations from the assigned intervention. The participant’s assigned treatment arm remains fixed from the moment of randomization.

3.2 Epidemiological Rationale

  1. Preservation of Randomization: By analyzing participants according to their original assignment, ITT preserves the benefits of randomization. This ensures that any baseline differences between groups (confounders) remain balanced, thus reducing bias introduced after randomization.

  2. Real-World Effectiveness: ITT reflects how treatments work in everyday clinical practice, where non-adherence, crossover, and other real-life issues are common. Consequently, ITT is often described as measuring effectiveness rather than idealized efficacy.

3.3 Methodological Considerations in ITT

  • Handling Missing Data:

    • Last Observation Carried Forward (LOCF): An older method, now less favored, where the last known outcome is carried forward.

    • Multiple Imputation: A more contemporary approach where missing values are statistically imputed based on observed data, better maintaining variance estimates.

    • Mixed-Effects Models (e.g., Linear Mixed Models): These can handle incomplete longitudinal data without discarding participants entirely.

  • Crossovers and Non-Adherence:Participants who switch from the treatment arm to the control arm (or vice versa) remain analyzed in their original groups. Statistical methods, such as principal stratification, can further explore the effect of crossovers but maintain the ITT principle in the primary analysis.

3.4 Pros and Cons of ITT

  • Advantages:

    1. Maintains Randomization: Minimizes post-randomization bias.

    2. Reflects Real-World Practice: Incorporates the complexities that clinicians face day-to-day.

  • Disadvantages:

    1. Conservative Estimate of Treatment Effect: True efficacy might be underestimated because non-adherent participants dilute the observed effect.

    2. Handling Missing Data: Requires careful planning and robust methods for data imputation or modeling.


 

4. Per-Protocol (PP) Analysis

4.1 What Is Per-Protocol?

Per-protocol analysis focuses on participants who completed the study exactly as specified by the protocol. This typically excludes those who deviated significantly from the assigned treatment schedule, missed multiple visits, or otherwise broke key protocol rules.

4.2 Epidemiological Rationale

  1. Assessment of Efficacy: By filtering out deviations, PP analysis aims to determine the true biological or therapeutic effect of an intervention under ideal conditions—often termed efficacy.

  2. Minimizing “Noise”: Removing non-adherent participants or those with protocol violations can theoretically provide a clearer cause-and-effect relationship between the intervention and outcome.

4.3 Methodological Considerations in PP

  • Defining Adherence Thresholds: Investigators must decide how to classify “adherent” participants (e.g., taking ≥80% of prescribed doses). This threshold can be somewhat arbitrary and can vary widely between studies.

  • Exclusion Criteria: Choosing which deviations justify exclusion is critical. Overly strict criteria can lead to a small subset of the original population, limiting external validity.

4.4 Pros and Cons of PP

  • Advantages:

    1. Strong Signal of Efficacy: Provides a scenario closer to an ideal “laboratory” setting.

    2. Mechanistic Insights: Helps to understand how the intervention performs when fully and correctly implemented.

  • Disadvantages:

    1. Loss of Randomization Benefits: Removing non-adherent participants can create imbalances in baseline characteristics, introducing selection bias.

    2. Reduced Generalizability: Focusing on a highly compliant subgroup may not reflect broader patient populations in real-world settings.


 

5. Beyond the Basics: Additional Analytic Strategies

5.1 Modified Intention-to-Treat (mITT)

Some trials use a modified ITT approach, defining a subset of participants who meet certain eligibility or protocol criteria before applying ITT principles. For instance, the mITT might include only participants who received at least one dose of study medication. Though widely used, it can introduce some post-randomization bias.

5.2 As-Treated Analysis

An as-treated analysis reclassifies participants based on the treatment they actually received. While this can be informative, it negates the primary advantage of randomization because participants’ real-world treatment choices may correlate with confounding factors that motivated them to switch groups.

5.3 Sensitivity Analyses

Many clinical trials use sensitivity analyses to test how robust the results are to different assumptions (e.g., varying thresholds of adherence or multiple methods for handling missing data). Reporting these analyses can build confidence in the primary findings or identify scenarios that significantly shift the conclusions.


 

6. Interpretation and Implications

  1. Regulatory and Guideline Recommendations:Major regulatory bodies (such as the FDA or EMA) frequently emphasize the importance of ITT for primary analyses due to its unbiased nature regarding real-world effectiveness.

  2. Clinical Decision-Making:

    • ITT Results: Often guide policy and clinical guidelines since they mirror typical patient behavior and adherence.

    • PP Results: Provide an upper-bound estimate of what might be possible under perfect adherence, guiding discussions about optimal practice or patient counseling.

  3. Balancing Efficacy and Effectiveness:Both ITT and PP are needed to form a complete picture. Where ITT can be too conservative by including non-adherers, PP can be too idealistic by excluding them. Reporting both allows readers to gauge the spectrum from real-world effect to idealized efficacy.


 

7. Example from Clinical Epidemiology

Imagine a multi-center RCT testing a new cholesterol-lowering drug:

  • ITT Analysis: All randomized patients are kept in their original groups (drug vs. placebo), even if some of them never adhered to the new drug or switched to other statins. This best reflects what clinicians might see in daily practice: incomplete adherence and real-world dropout rates.

  • PP Analysis: Only includes those who took at least 90% of the assigned doses and completed the trial without protocol deviations. This narrower group might demonstrate a higher reduction in LDL cholesterol, illustrating the maximum potential effect of strict adherence.

These two analyses help stakeholders understand both the likely population-level impact (ITT) and the best-case scenario (PP).


 

8. Best Practices for Researchers

  • Plan Analysis Early:Pre-specify ITT and PP definitions in the study protocol, including how you will handle missing data and what criteria define protocol adherence.

  • Perform and Report Both Analyses:Whenever possible, conduct both ITT and PP to provide a comprehensive interpretation. Present them as complementary rather than competing results.

  • Use Sensitivity Analyses:Explore how different assumptions about missing data or adherence thresholds could influence results. Document these steps transparently.

  • Involve Biostatisticians:Complex trials often need input from biostatisticians, especially for robust methods like multiple imputation, mixed-effects models, or handling crossover events.


 

9. Conclusion

In clinical epidemiology, intention-to-treat and per-protocol analyses each address distinct research questions and serve complementary roles:

  • Intention-to-Treat (ITT):

    • Preserves randomization and reduces bias

    • Reflects real-world practice and behavior

    • Tends to produce more conservative estimates of effect

  • Per-Protocol (PP):

    • Focuses on ideal adherence, providing a measure of efficacy

    • May lose randomization benefits and introduce selection bias

    • Often considered a secondary or supportive analysis

By understanding the strengths, weaknesses, and underlying assumptions of both ITT and PP approaches, clinical epidemiologists and researchers can design and interpret trials in ways that bring clarity to both efficacy under ideal conditions and effectiveness in routine healthcare settings. Ultimately, effective use of these methods leads to more robust, transparent, and impactful evidence for guiding clinical decisions.

Recent Posts

See All

OSCE: Cervical Punch Biopsy

Introduction A cervical punch biopsy is a procedure used to obtain a small tissue sample from the cervix to investigate suspicious...

Commentaires

Noté 0 étoile sur 5.
Pas encore de note

Ajouter une note
Post: Blog2_Post

Message for International Readers
Understanding My Medical Context in Thailand

By Uniqcret, M.D.
 

Dear readers,
 

My name is Uniqcret, which is my pen name used in all my medical writings. I am a Doctor of Medicine trained and currently practicing in Thailand, a developing country in Southeast Asia.
 

The medical training environment in Thailand is vastly different from that of Western countries. Our education system heavily emphasizes rote memorization—those who excel are often seen as "walking encyclopedias." Unfortunately, those who question, critically analyze, or solve problems efficiently may sometimes be overlooked, despite having exceptional clinical thinking skills.
 

One key difference is in patient access. In Thailand, patients can walk directly into tertiary care centers without going through a referral system or primary care gatekeeping. This creates an intense clinical workload for doctors and trainees alike. From the age of 20, I was already seeing real patients, performing procedures, and assisting in operations—not in simulations, but in live clinical situations. Long work hours, sometimes exceeding 48 hours without sleep, are considered normal for young doctors here.
 

Many of the insights I share are based on first-hand experiences, feedback from attending physicians, and real clinical practice. In our culture, teaching often involves intense feedback—what we call "โดนซอย" (being sliced). While this may seem harsh, it pushes us to grow stronger, think faster, and become more capable under pressure. You could say our motto is “no pain, no gain.”
 

Please be aware that while my articles may contain clinically accurate insights, they are not always suitable as direct references for academic papers, as some content is generated through AI support based on my knowledge and clinical exposure. If you wish to use the content for academic or clinical reference, I strongly recommend cross-verifying it with high-quality sources or databases. You may even copy sections of my articles into AI tools or search engines to find original sources for further reading.
 

I believe that my knowledge—built from real clinical experience in a high-intensity, under-resourced healthcare system—can offer valuable perspectives that are hard to find in textbooks. Whether you're a student, clinician, or educator, I hope my content adds insight and value to your journey.
 

With respect and solidarity,

Uniqcret, M.D.

Physician | Educator | Writer
Thailand

bottom of page